Publications
ReCSiP (ODE) Papers and Presentations
- A Framework for ODE-Based Multimodel Biochemical Simulations
on an FPGA
- Y.Osana, T.Fukushima, M.Yoshimi, Y.Iwaoka, A.Funahashi, N.Hiroi, Y.Shibata, N.Iwanaga, H.Kitano and H.Amano
- in Proc. of the FPL'05 (Aug.2005, Tampere, Finland), pp.574-577
- [Poster: PDF]
- Efficient Scheduling of Rate Law Functions for ODE-Based
Multimodel Biochemical Simulation on an FPGA
- N.Iwanaga, Y.Shibata, M.Yoshimi, Y.Osana, Y.Iwaoka,
T.Fukushima, H.Amano, A.Funahashi, N.Hiroi, H.Kitano and K.Oguri
- in Proc. of the FPL'05 (Aug.2005, Tampere, Finland), pp.666-669
- [Poster: PDF]
- An FPGA-Based, Multi-model Simulation Method for Biochemical Systems
- Y.Osana, T.Fukushima, M.Yoshimi, Y.Iwaoka, A.Funahashi, N.Hiroi, Y.Shibata, H.Kitano and H.Amano
- in Proc. of IPDPS/RAW'05 (Apr.2005, Denver, CO, USA)
- [Poster: PDF]
- An FPGA-Based Acceleration Method for Metabolic Simulation
- Y.Osana, T.Fukushima, M.Yoshimi and H.Amano
- in IEICE Trans. on Information and Systems, Vol. E87-D, No. 8, pp.2029-3037, Aug. 2004
- ReCSiP: a ReConfigurable Cell SImulation Platform - Accelerating Biological Applications with FPGA -
- Y.Osana, T.Fukushima and H.Amano
- in Proc. of ASP-DAC '04, pp.731-733, Jan.2004
- Implementation of ReCSiP: a ReConfigurable Cell SImulation Platform
- Y.Osana, T.Fukushima and H.Amano
- in Proc. of FPL'03, pp.766-775, Sep.2003
ReCSiP (Stochastic) Presentations
- Will appear at FPL'05 (coming soon!)
- Stochastic Simulation for Biochemical Reactions on FPGA
- M.Yoshimi, Y.Osana, T.Fukushima and H.Amano
- in Proc. of FPL'04, pp.105-114, Aug.2004